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Paket: art-nextgen-simulation-tools (20160605+dfsg-4build2)

simulation tools to generate synthetic next-generation sequencing reads

ART is a set of simulation tools to generate synthetic next-generation sequencing reads. ART simulates sequencing reads by mimicking real sequencing process with empirical error models or quality profiles summarized from large recalibrated sequencing data. ART can also simulate reads using user own read error model or quality profiles. ART supports simulation of single-end, paired-end/mate-pair reads of three major commercial next-generation sequencing platforms: Illumina's Solexa, Roche's 454 and Applied Biosystems' SOLiD. ART can be used to test or benchmark a variety of method or tools for next-generation sequencing data analysis, including read alignment, de novo assembly, SNP and structure variation discovery. ART was used as a primary tool for the simulation study of the 1000 Genomes Project . ART is implemented in C++ with optimized algorithms and is highly efficient in read simulation. ART outputs reads in the FASTQ format, and alignments in the ALN format. ART can also generate alignments in the SAM alignment or UCSC BED file format. ART can be used together with genome variants simulators (e.g. VarSim) for evaluating variant calling tools or methods.

art-nextgen-simulation-tools ile İlgili Diğer Paketler

  • bağımlılıklar
  • tavsiye edilen
  • önerilen
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb
  • dep: libgcc-s1 (>= 3.3.1) [armhf değil]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libgsl27 (>= 2.7.1)
    GNU Scientific Library (GSL) -- library package
  • dep: libstdc++6 (>= 5.2) [armhf]
    GNU Standard C++ Library v3
    dep: libstdc++6 (>= 9) [armhf değil]

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Tüm mevcut mimariler için indir
Mimari Paket Boyutu Kurulu Boyut Dosyalar
amd64 1.710,0 kB9004 kB [dosya listesi]
arm64 1.728,5 kB8948 kB [dosya listesi]
armhf 1.764,2 kB8949 kB [dosya listesi]
ppc64el 1.730,3 kB9160 kB [dosya listesi]