Skip to content
Sections
>> Trisquel >> Paketler >> aramo >> perl >> libfreecontact-perl
[  etiona  ] [  nabia  ] [  aramo  ]
[ Kaynak: libfreecontact-perl  ]

Paket: libfreecontact-perl (0.08-9build1)

fast protein contact predictor - binding for Perl

FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).

FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.

A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.

jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.

This package contains the Perl binding.

libfreecontact-perl ile İlgili Diğer Paketler

  • bağımlılıklar
  • tavsiye edilen
  • önerilen
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb
  • dep: libfreecontact0v5 (>= 1.0.21)
    fast protein contact predictor library
  • dep: libgcc-s1 (>= 3.0) [ppc64el]
    GCC support library
    dep: libgcc-s1 (>= 3.3.1) [amd64, arm64]
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • dep: perlapi-5.34.0
    sanal paketi sağlayan perl-base

libfreecontact-perl indir

Tüm mevcut mimariler için indir
Mimari Paket Boyutu Kurulu Boyut Dosyalar
amd64 70,8 kB213 kB [dosya listesi]
arm64 69,9 kB200 kB [dosya listesi]
armhf 69,2 kB192 kB [dosya listesi]
ppc64el 68,9 kB289 kB [dosya listesi]