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Paket: igdiscover (0.11-3)

analyzes antibody repertoires to find new V genes

IgDiscover analyzes antibody repertoires and discovers new V genes from high-throughput sequencing reads. Heavy chains, kappa and lambda light chains are supported (to discover VH, VK and VL genes).

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  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: python3-cutadapt
    Clean biological sequences from high-throughput sequencing reads (Python 3)
  • dep: python3-matplotlib (>= 1.5.0)
    Python based plotting system in a style similar to Matlab (Python 3)
  • dep: python3-numpy
    Fast array facility to the Python 3 language
  • dep: python3-pandas (>= 0.16.2)
    data structures for "relational" or "labeled" data
  • dep: python3-ruamel.yaml
    roundtrip YAML parser/emitter (Python 3 module)
  • dep: python3-scipy (>= 0.16.1)
    scientific tools for Python 3
  • dep: python3-seaborn (>= 0.9)
    statistical visualization library for Python3
  • dep: python3-sqt
    SeQuencing Tools for biological DNA/RNA high-throughput data
  • dep: python3-xopen (>= 0.3.2)
    Python3 module to open compressed files transparently
  • sug: igdiscover-doc
    analyzes antibody repertoires to find new V genes - doc
  • sug: snakemake
    pythonic workflow management system

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