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[ Kaynak: nanolyse  ]

Paket: nanolyse (1.2.0-3)

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nanolyse

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remove lambda phage reads from a fastq file

NanoLyse is a tool for rapid removal of contaminant DNA, using the Minimap2 aligner through the mappy Python binding. A typical application would be the removal of the lambda phage control DNA fragment supplied by ONT, for which the reference sequence is included in the package. However, this approach may lead to unwanted loss of reads from regions highly homologous to the lambda phage genome.

nanolyse ile İlgili Diğer Paketler

  • bağımlılıklar
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  • önerilen
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: python3-biopython
    Python3 library for bioinformatics
  • dep: python3-mappy
    Python3 interface minimap2

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Mimari Paket Boyutu Kurulu Boyut Dosyalar
ppc64el 25,2 kB66 kB [dosya listesi]