Paket: packmol (20.010-1build1)
packmol için bağlantılar
Trisquel Kaynakları:
packmol Kaynak Paketini İndir:
Geliştirici:
Original Maintainers:
- Debichem Team (Posta Arşivi)
- Drew Parsons
Dış Kaynaklar:
- Ana Sayfa [m3g.iqm.unicamp.br]
Benzer paketler:
Initial configurations for Molecular Dynamics Simulations
Initial configurations for Molecular Dynamics Simulations by packing optimization.
Packmol creates an initial point for molecular dynamics simulations by packing molecules in defined regions of space. The packing guarantees that short range repulsive interactions do not disrupt the simulations.
The great variety of types of spatial constraints that can be attributed to the molecules, or atoms within the molecules, makes it easy to create ordered systems, such as lamellar, spherical or tubular lipid layers.
The user must provide only the coordinates of one molecule of each type, the number of molecules of each type and the spatial constraints that each type of molecule must satisfy.
The package is compatible with input files of PDB, TINKER, XYZ and MOLDY formats.
See http://m3g.iqm.unicamp.br/packmol for more information.
References
Please always cite one of the following references in publications for which Packmol was useful:
L Martinez, R Andrade, EG Birgin, JM Martinez, Packmol: A package for building initial configurations for molecular dynamics simulations. Journal of Computational Chemistry, 30, 2157-2164, 2009. (http://www3.interscience.wiley.com/journal/122210103/abstract)
JM Martinez, L Martinez, Packing optimization for the automated generation of complex system's initial configurations for molecular dynamics and docking. Journal of Computational Chemistry, 24, 819-825, 2003. (http://www3.interscience.wiley.com/journal/104086246/abstract)
packmol ile İlgili Diğer Paketler
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ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb
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- dep: libgfortran5 (>= 8)
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- rec: tcl
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packmol indir
Mimari | Paket Boyutu | Kurulu Boyut | Dosyalar |
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ppc64el | 113,5 kB | 468 kB | [dosya listesi] |