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Paket: kallisto (0.46.2+dfsg-3)

kallisto için bağlantılar

kallisto

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near-optimal RNA-Seq quantification

Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment. On benchmarks with standard RNA-Seq data, kallisto can quantify 30 million human reads in less than 3 minutes on a Mac desktop computer using only the read sequences and a transcriptome index that itself takes less than 10 minutes to build. Pseudoalignment of reads preserves the key information needed for quantification, and kallisto is therefore not only fast, but also as accurate than existing quantification tools. In fact, because the pseudoalignment procedure is robust to errors in the reads, in many benchmarks kallisto significantly outperforms existing tools.

kallisto ile İlgili Diğer Paketler

  • bağımlılıklar
  • tavsiye edilen
  • önerilen
  • dep: libc6 (>= 2.33)
    GNU C Library: Shared libraries
    ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb
  • dep: libgcc-s1 (>= 3.3.1) [amd64, arm64]
    GCC support library
    dep: libgcc-s1 (>= 3.4.4) [ppc64el]
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libhts3 (>= 1.10)
    C library for high-throughput sequencing data formats
  • dep: libstdc++6 (>= 6) [ppc64el değil]
    GNU Standard C++ Library v3
    dep: libstdc++6 (>= 9) [ppc64el]
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime

kallisto indir

Tüm mevcut mimariler için indir
Mimari Paket Boyutu Kurulu Boyut Dosyalar
amd64 218,0 kB622 kB [dosya listesi]
arm64 195,0 kB530 kB [dosya listesi]
armhf 209,4 kB448 kB [dosya listesi]
ppc64el 238,8 kB722 kB [dosya listesi]