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Paket: ampliconnoise (1.29-7)

removal of noise from 454 sequenced PCR amplicons

AmpliconNoise is a package of applications to clean up high-throughput sequence data. It consists of three main parts:

Pyronoise - does flowgram-based clustering to spot misreads SeqNoise - removes PCR point mutations Perseus - removes PCR chimeras without the need for a set of reference sequences

Previously there was a standalone "Pyronoise" by the same authors and this package includes an updated version. There is also a "Denoiser" in Qiime which is related but distinct.

ampliconnoise ile İlgili Diğer Paketler

  • bağımlılıklar
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  • dep: libc6 (>= 2.4)
    GNU C Library: Shared libraries
    ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb
  • dep: libgsl23
    GNU Scientific Library (GSL) -- library package
  • dep: libgslcblas0
    GNU Scientific Library (GSL) -- blas library package
  • dep: libopenmpi2
    high performance message passing library -- shared library
  • dep: mafft
    Multiple alignment program for amino acid or nucleotide sequences
  • rec: openmpi-bin
    high performance message passing library -- binaries

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i386 458,1 kB1346 kB [dosya listesi]