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Paket: libbio-db-hts-perl (3.01-3)

Perl interface to the HTS library

HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang.

HTSlib implements a generalized BAM (binary SAM) index, with file extension 'csi' (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent.

This package provides a Perl interface to the HTS library.

libbio-db-hts-perl ile İlgili Diğer Paketler

  • bağımlılıklar
  • tavsiye edilen
  • önerilen
  • dep: libbio-perl-perl
    BioPerl core perl modules
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb
    dep: libc6 (>= 2.4) [armhf]
  • dep: libhts3 (>= 1.10)
    C library for high-throughput sequencing data formats
  • dep: perl (>= 5.30.0-9)
    Larry Wall's Practical Extraction and Report Language
  • dep: perlapi-5.30.0
    sanal paketi sağlayan perl-base
  • dep: zlib1g (>= 1:1.2.3.3)
    compression library - runtime

libbio-db-hts-perl indir

Tüm mevcut mimariler için indir
Mimari Paket Boyutu Kurulu Boyut Dosyalar
amd64 153,5 kB450 kB [dosya listesi]
armhf 147,3 kB392 kB [dosya listesi]