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[ 源代码: gasic  ]

软件包: gasic (0.0.r19-3)

gasic 的相关链接

gasic

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维护者:

Original Maintainers:

  • Debian Med Packaging Team (Mail Archive)
  • Andreas Tille
  • Navid Fehrenbacher
  • Roland Fehrenbacher

外部的资源:

相似软件包:

genome abundance similarity correction

One goal of sequencing based metagenomic analysis is the quantitative taxonomic assessment of microbial community compositions. However, the majority of approaches either quantify at low resolution (e.g. at phylum level) or have severe problems discerning highly similar species. Yet, accurate quantification on species level is desirable in applications such as metagenomic diagnostics or community comparison. GASiC is a method to correct read alignment results for the ambiguities imposed by similarities of genomes. It has superior performance over existing methods.

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  • dep: bowtie
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  • dep: python
    interactive high-level object-oriented language (default version)
  • dep: python-biopython
    Python library for bioinformatics (implemented in Python 2)
  • dep: python-matplotlib
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  • dep: python-numpy
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  • dep: python-pysam
    interface for the SAM/BAM sequence alignment and mapping format (Python 2)
  • dep: python-scipy
    scientific tools for Python
  • dep: seqan-apps
    C++ library for the analysis of biological sequences

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硬件架构 软件包大小 安装后大小 文件
amd64 19.8 kB74 kB [文件列表]