软件包: rna-star (2.5.4b+dfsg-1)
rna-star 的相关链接
Trisquel 的资源:
下载源码包 rna-star:
- [rna-star_2.5.4b+dfsg-1.dsc]
- [rna-star_2.5.4b+dfsg.orig.tar.xz]
- [rna-star_2.5.4b+dfsg-1.debian.tar.xz]
维护者:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Steffen Moeller
- Andreas Tille
- Sascha Steinbiss
外部的资源:
- 主页 [github.com]
相似软件包:
ultrafast universal RNA-seq aligner
Spliced Transcripts Alignment to a Reference (STAR) software based on a previously undescribed RNA-seq alignment algorithm that uses sequential maximum mappable seed search in uncompressed suffix arrays followed by seed clustering and stitching procedure. STAR outperforms other aligners by a factor of >50 in mapping speed, aligning to the human genome 550 million 2 × 76 bp paired-end reads per hour on a modest 12-core server, while at the same time improving alignment sensitivity and precision. In addition to unbiased de novo detection of canonical junctions, STAR can discover non-canonical splices and chimeric (fusion) transcripts, and is also capable of mapping full-length RNA sequences. Using Roche 454 sequencing of reverse transcription polymerase chain reaction amplicons, the authors experimentally validated 1960 novel intergenic splice junctions with an 80-90% success rate, corroborating the high precision of the STAR mapping strategy.
其他与 rna-star 有关的软件包
|
|
|
-
- dep: libc6 (>= 2.14)
- GNU C Library: Shared libraries
同时作为一个虚包由这些包填实: libc6-udeb
-
- dep: libgcc1 (>= 1:3.3.1)
- GCC support library
-
- dep: libgomp1 (>= 4.9)
- GCC OpenMP (GOMP) support library
-
- dep: libhts2 (>= 1.0)
- C library for high-throughput sequencing data formats
-
- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3