[ nabia ]
[ aramo ]
[ 原始碼： unicycler ]
套件： unicycler (0.4.8+dfsg-2build1)
unicycler 的相關超連結
Trisquel 的資源：
下載原始碼套件 unicycler：
- [unicycler_0.4.8+dfsg-2build1.dsc]
- [unicycler_0.4.8+dfsg.orig.tar.xz]
- [unicycler_0.4.8+dfsg-2build1.debian.tar.xz]
維護者：
Original Maintainers:
- Debian Med Packaging Team (郵件存檔)
- Andreas Tille
- Liubov Chuprikova
外部的資源：
- 主頁 [github.com]
相似套件：
hybrid assembly pipeline for bacterial genomes
Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. For the best possible assemblies, give it both Illumina reads and long reads, and it will conduct a hybrid assembly.
其他與 unicycler 有關的套件
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- dep: bcftools
- genomic variant calling and manipulation of VCF/BCF files
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- dep: bowtie2
- ultrafast memory-efficient short read aligner
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- dep: default-jre
- Standard Java or Java compatible Runtime
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- dep: libc6 (>= 2.29)
- GNU C Library: Shared libraries
同時作為一個虛擬套件由這些套件提供： libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC support library
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- dep: libstdc++6 (>= 6)
- GNU Standard C++ Library v3
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- dep: miniasm
- ultrafast de novo assembler for long noisy DNA sequencing reads
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- dep: ncbi-blast+
- next generation suite of BLAST sequence search tools
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- dep: pilon
- automated genome assembly improvement and variant detection tool
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (>= 3~)
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- dep: python3-setuptools
- Python3 Distutils Enhancements
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- dep: racon
- consensus module for raw de novo DNA assembly of long uncorrected reads
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- dep: spades (>= 3.13.1)
- genome assembler for single-cell and isolates data sets
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
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- rec: unicycler-data
- hybrid assembly pipeline for bacterial genomes (data package)