[ Quellcode: spades ]
Paket: spades (3.11.1+dfsg-1)
Links für spades
Trisquel-Ressourcen:
Quellcode-Paket spades herunterladen:
Betreuer:
Original Maintainers:
- Debian Med Packaging Team (E-Mail-Archiv)
- Andreas Tille
- Afif Elghraoui
- Sascha Steinbiss
- Michael R. Crusoe
Externe Ressourcen:
- Homepage [cab.spbu.ru]
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genome assembler for single-cell and isolates data sets
The SPAdes – St. Petersburg genome assembler is intended for both standard isolates and single-cell MDA bacteria assemblies. It works with Illumina or IonTorrent reads and is capable of providing hybrid assemblies using PacBio and Sanger reads. You can also provide additional contigs that will be used as long reads.
Andere Pakete mit Bezug zu spades
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- dep: bamtools
- toolkit for manipulating BAM (genome alignment) files
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- dep: libc6 (>= 2.15)
- GNU C Library: Shared libraries
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
-
- dep: libgcc1 (>= 1:4.0)
- GCC support library
-
- dep: libgomp1 (>= 4.9)
- GCC OpenMP (GOMP) support library
-
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-
- dep: libjemalloc1 (>= 2.1.1)
- general-purpose scalable concurrent malloc(3) implementation
-
- dep: libnlopt0 (>= 2.2.4)
- nonlinear optimization library
-
- dep: libssw0
- fast SIMD parallelized implementation of the Smith-Waterman algorithm
-
- dep: libstdc++6 (>= 6)
- GNU Standard C++ Library v3
-
- dep: python
- interactive high-level object-oriented language (default version)
-
- dep: python-joblib
- tools to provide lightweight pipelining in Python
-
- dep: python-yaml
- YAML parser and emitter for Python
-
- dep: samtools
- processing sequence alignments in SAM and BAM formats
-
- dep: zlib1g (>= 1:1.2.3.3)
- compression library - runtime
spades herunterladen
| Architektur | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|
| amd64 | 3.673,8 kB | 17287 kB | [Liste der Dateien] |