[ ソース: spades ]
パッケージ: spades (3.11.1+dfsg-1)
spades に関するリンク
Trisquel の資源:
spades ソースパッケージをダウンロード:
メンテナ:
Original Maintainers:
- Debian Med Packaging Team (メールアーカイブ)
- Andreas Tille
- Afif Elghraoui
- Sascha Steinbiss
- Michael R. Crusoe
外部の資源:
- ホームページ [cab.spbu.ru]
類似のパッケージ:
genome assembler for single-cell and isolates data sets
The SPAdes – St. Petersburg genome assembler is intended for both standard isolates and single-cell MDA bacteria assemblies. It works with Illumina or IonTorrent reads and is capable of providing hybrid assemblies using PacBio and Sanger reads. You can also provide additional contigs that will be used as long reads.
その他の spades 関連パッケージ
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- dep: bamtools
- toolkit for manipulating BAM (genome alignment) files
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- dep: bwa
- Burrows-Wheeler Aligner
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- dep: libc6 (>= 2.15)
- GNU C Library: Shared libraries
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
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- dep: libgcc1 (>= 1:4.0)
- GCC support library
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- dep: libgomp1 (>= 4.9)
- GCC OpenMP (GOMP) support library
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- dep: libhat-trie0
- HAT-trie, an extremely efficient (space and time) modern variant of tries
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- dep: libjemalloc1 (>= 2.1.1)
- general-purpose scalable concurrent malloc(3) implementation
-
- dep: libnlopt0 (>= 2.2.4)
- nonlinear optimization library
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- dep: libssw0
- fast SIMD parallelized implementation of the Smith-Waterman algorithm
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- dep: libstdc++6 (>= 6)
- GNU Standard C++ Library v3
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- dep: python
- interactive high-level object-oriented language (default version)
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- dep: python-joblib
- tools to provide lightweight pipelining in Python
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- dep: python-yaml
- YAML parser and emitter for Python
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- dep: samtools
- processing sequence alignments in SAM and BAM formats
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- dep: zlib1g (>= 1:1.2.3.3)
- compression library - runtime