[ 原始碼： spades ]
套件： spades (3.11.1+dfsg-1)
spades 的相關超連結
Trisquel 的資源：
下載原始碼套件 spades：
維護者：
Original Maintainers:
- Debian Med Packaging Team (郵件存檔)
- Andreas Tille
- Afif Elghraoui
- Sascha Steinbiss
- Michael R. Crusoe
外部的資源：
- 主頁 [cab.spbu.ru]
相似套件：
genome assembler for single-cell and isolates data sets
The SPAdes – St. Petersburg genome assembler is intended for both standard isolates and single-cell MDA bacteria assemblies. It works with Illumina or IonTorrent reads and is capable of providing hybrid assemblies using PacBio and Sanger reads. You can also provide additional contigs that will be used as long reads.
其他與 spades 有關的套件
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- dep: bamtools
- toolkit for manipulating BAM (genome alignment) files
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- dep: bwa
- Burrows-Wheeler Aligner
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- dep: libc6 (>= 2.15)
- GNU C Library: Shared libraries
同時作為一個虛擬套件由這些套件提供： libc6-udeb
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- dep: libgcc1 (>= 1:4.0)
- GCC support library
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- dep: libgomp1 (>= 4.9)
- GCC OpenMP (GOMP) support library
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- dep: libhat-trie0
- HAT-trie, an extremely efficient (space and time) modern variant of tries
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- dep: libjemalloc1 (>= 2.1.1)
- general-purpose scalable concurrent malloc(3) implementation
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- dep: libnlopt0 (>= 2.2.4)
- nonlinear optimization library
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- dep: libssw0
- fast SIMD parallelized implementation of the Smith-Waterman algorithm
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- dep: libstdc++6 (>= 6)
- GNU Standard C++ Library v3
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- dep: python
- interactive high-level object-oriented language (default version)
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- dep: python-joblib
- tools to provide lightweight pipelining in Python
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- dep: python-yaml
- YAML parser and emitter for Python
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- dep: samtools
- processing sequence alignments in SAM and BAM formats
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- dep: zlib1g (>= 1:1.2.3.3)
- compression library - runtime