Paquet : libseqlib1 (1.1.2+dfsg-6)
Liens pour libseqlib1
Ressources Trisquel :
Télécharger le paquet source libseqlib :
- [libseqlib_1.1.2+dfsg-6.dsc]
- [libseqlib_1.1.2+dfsg.orig.tar.xz]
- [libseqlib_1.1.2+dfsg-6.debian.tar.xz]
Responsable :
Original Maintainers:
- Debian Med Packaging Team (Archive du courrier électronique)
- Andreas Tille
Ressources externes :
- Page d'accueil [github.com]
Paquets similaires :
C++ htslib/bwa-mem/fermi interface for interrogating sequence data
C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.
Autres paquets associés à libseqlib1
|
|
|
-
- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
un paquet virtuel est également fourni par libc6-udeb
- dep: libc6 (>= 2.4) [armhf]
-
- dep: libfml0 (>= 0.1)
- library for assembling Illumina short reads in small regions
-
- dep: libgcc-s1 (>= 3.0) [amd64]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armhf]
-
- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
-
- dep: libjsoncpp1 (>= 1.7.4)
- library for reading and writing JSON for C++
-
- dep: libssw0 (>= 1.1)
- fast SIMD parallelized implementation of the Smith-Waterman algorithm
-
- dep: libstdc++6 (>= 9)
- GNU Standard C++ Library v3
-
- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
Télécharger libseqlib1
| Architecture | Taille du paquet | Espace occupé une fois installé | Fichiers |
|---|---|---|---|
| amd64 | 118,9 ko | 404 ko | [liste des fichiers] |
| armhf | 103,1 ko | 278 ko | [liste des fichiers] |