[ ソース: metaphlan2 ]
パッケージ: metaphlan2 (2.9.22-1)
metaphlan2 に関するリンク
Trisquel の資源:
metaphlan2 ソースパッケージをダウンロード:
メンテナ:
Original Maintainers:
- Debian Med Packaging Team (メールアーカイブ)
- Andreas Tille
外部の資源:
- ホームページ [bitbucket.org]
類似のパッケージ:
Metagenomic Phylogenetic Analysis
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea, Eukaryotes and Viruses) from metagenomic shotgun sequencing data with species level resolution. From version 2.0, MetaPhlAn is also able to identify specific strains (in the not-so-frequent cases in which the sample contains a previously sequenced strains) and to track strains across samples for all species.
MetaPhlAn 2.0 relies on ~1M unique clade-specific marker genes (the marker information file can be found at usr/share/metaphlan2/utils/markers_info.txt.bz2) identified from ~17,000 reference genomes (~13,500 bacterial and archaeal, ~3,500 viral, and ~110 eukaryotic), allowing:
* unambiguous taxonomic assignments; * accurate estimation of organismal relative abundance; * species-level resolution for bacteria, archaea, eukaryotes and viruses; * strain identification and tracking * orders of magnitude speedups compared to existing methods. * metagenomic strain-level population genomics
その他の metaphlan2 関連パッケージ
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- ultrafast memory-efficient short read aligner
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- dep: python3-biom-format
- Biological Observation Matrix (BIOM) format (Python 3)
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- dep: python3-msgpack
- Python 3 implementation of MessagePack format
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