Balík: metaphlan2 (2.9.22-1)

Odkazy pre metaphlan2

Zdroje Trisquel:

Stiahnuť zdrojový balík metaphlan2:

Správca:

Debian Med Packaging Team (Konferencia)

Original Maintainers:

Debian Med Packaging Team (Konferencia)
Andreas Tille

Externé zdroje:

Domovská stránka [bitbucket.org]

Podobné balíky:

Metagenomic Phylogenetic Analysis

MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea, Eukaryotes and Viruses) from metagenomic shotgun sequencing data with species level resolution. From version 2.0, MetaPhlAn is also able to identify specific strains (in the not-so-frequent cases in which the sample contains a previously sequenced strains) and to track strains across samples for all species.

MetaPhlAn 2.0 relies on ~1M unique clade-specific marker genes (the marker information file can be found at usr/share/metaphlan2/utils/markers_info.txt.bz2) identified from ~17,000 reference genomes (~13,500 bacterial and archaeal, ~3,500 viral, and ~110 eukaryotic), allowing:

 * unambiguous taxonomic assignments;
 * accurate estimation of organismal relative abundance;
 * species-level resolution for bacteria, archaea, eukaryotes and
   viruses;
 * strain identification and tracking
 * orders of magnitude speedups compared to existing methods.
 * metagenomic strain-level population genomics

Ostatné balíky súvisiace s balíkom metaphlan2

závisí

odporúča

navrhuje

dep: bowtie2

ultrafast memory-efficient short read aligner
dep: metaphlan2-data

data package for Metagenomic Phylogenetic Analysis
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-biom-format

Biological Observation Matrix (BIOM) format (Python 3)
dep: python3-msgpack

Python 3 implementation of MessagePack format
dep: python3-pandas

data structures for "relational" or "labeled" data

Stiahnuť metaphlan2

Stiahnuť pre všetky dostupné architektúry
Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
all	565.4 kB	1127 kB	[zoznam súborov]

Sections