Paket: metaphlan2 (2.9.22-1)

metaphlan2 için bağlantılar

Trisquel Kaynakları:

metaphlan2 Kaynak Paketini İndir:

Geliştirici:

Debian Med Packaging Team (Posta Arşivi)

Original Maintainers:

Debian Med Packaging Team (Posta Arşivi)
Andreas Tille

Dış Kaynaklar:

Ana Sayfa [bitbucket.org]

Benzer paketler:

Metagenomic Phylogenetic Analysis

MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea, Eukaryotes and Viruses) from metagenomic shotgun sequencing data with species level resolution. From version 2.0, MetaPhlAn is also able to identify specific strains (in the not-so-frequent cases in which the sample contains a previously sequenced strains) and to track strains across samples for all species.

MetaPhlAn 2.0 relies on ~1M unique clade-specific marker genes (the marker information file can be found at usr/share/metaphlan2/utils/markers_info.txt.bz2) identified from ~17,000 reference genomes (~13,500 bacterial and archaeal, ~3,500 viral, and ~110 eukaryotic), allowing:

 * unambiguous taxonomic assignments;
 * accurate estimation of organismal relative abundance;
 * species-level resolution for bacteria, archaea, eukaryotes and
   viruses;
 * strain identification and tracking
 * orders of magnitude speedups compared to existing methods.
 * metagenomic strain-level population genomics

metaphlan2 ile İlgili Diğer Paketler

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dep: bowtie2

ultrafast memory-efficient short read aligner
dep: metaphlan2-data

data package for Metagenomic Phylogenetic Analysis
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-biom-format

Biological Observation Matrix (BIOM) format (Python 3)
dep: python3-msgpack

Python 3 implementation of MessagePack format
dep: python3-pandas

data structures for "relational" or "labeled" data

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