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Balík: yanosim (0.1-4)

read simulator nanopore DRS datasets

Yanosim has three options:

1. yanosim model: 

   Creates an model of mismatches, insertions and deletions
   based on an alignment of nanopore DRS reads to a
   reference. Reads should be aligned to a transcriptome
   i.e. without spliced alignment, using minimap2. They
   should have the cs tag.
2. yanosim quantify: 
   Quantify the number of reads mapping to each
   transcript in a reference, so that the right number
   of reads can be simulated.
3. yanosim simulate: 
   Given a model created using yanosim model, and
   per-transcript read counts created using yanosim
   simulate, simulate error-prone long-reads from the
   given fasta file.

Ostatné balíky súvisiace s balíkom yanosim

  • závisí
  • odporúča
  • navrhuje
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: python3-click
    Wrapper around optparse for command line utilities - Python 3.x
  • dep: python3-numpy
    Fast array facility to the Python 3 language
  • dep: python3-pysam
    interface for the SAM/BAM sequence alignment and mapping format (Python 3)
  • dep: python3-scipy
    scientific tools for Python 3

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