Skip to content
Sections
>> Trisquel >> Paket >> aramo >> science >> yanosim
[  aramo  ]
[ Källkod: yanosim  ]

Paket: yanosim (0.1-4)

read simulator nanopore DRS datasets

Yanosim has three options:

1. yanosim model: 

   Creates an model of mismatches, insertions and deletions
   based on an alignment of nanopore DRS reads to a
   reference. Reads should be aligned to a transcriptome
   i.e. without spliced alignment, using minimap2. They
   should have the cs tag.
2. yanosim quantify: 
   Quantify the number of reads mapping to each
   transcript in a reference, so that the right number
   of reads can be simulated.
3. yanosim simulate: 
   Given a model created using yanosim model, and
   per-transcript read counts created using yanosim
   simulate, simulate error-prone long-reads from the
   given fasta file.

Andra paket besläktade med yanosim

  • beror
  • rekommenderar
  • föreslår
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: python3-click
    Wrapper around optparse for command line utilities - Python 3.x
  • dep: python3-numpy
    Fast array facility to the Python 3 language
  • dep: python3-pysam
    interface for the SAM/BAM sequence alignment and mapping format (Python 3)
  • dep: python3-scipy
    scientific tools for Python 3

Hämta yanosim

Hämtningar för alla tillgängliga arkitekturer
Arkitektur Paketstorlek Installerad storlek Filer
ppc64el 9,5 kbyte45 kbyte [filförteckning]