[ Källkod: spades ]
Paket: spades (3.11.1+dfsg-1)
Länkar för spades
Trisquelresurser:
Hämta källkodspaketet spades:
Ansvarig:
Original Maintainers:
- Debian Med Packaging Team (E-postarkiv)
- Andreas Tille
- Afif Elghraoui
- Sascha Steinbiss
- Michael R. Crusoe
Externa resurser:
- Hemsida [cab.spbu.ru]
Liknande paket:
genome assembler for single-cell and isolates data sets
The SPAdes – St. Petersburg genome assembler is intended for both standard isolates and single-cell MDA bacteria assemblies. It works with Illumina or IonTorrent reads and is capable of providing hybrid assemblies using PacBio and Sanger reads. You can also provide additional contigs that will be used as long reads.
Andra paket besläktade med spades
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- dep: bamtools
- toolkit for manipulating BAM (genome alignment) files
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- dep: bwa
- Burrows-Wheeler Aligner
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- dep: libc6 (>= 2.15)
- GNU C Library: Shared libraries
också ett virtuellt paket som tillhandahålls av libc6-udeb
-
- dep: libgcc1 (>= 1:4.0)
- GCC support library
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- dep: libgomp1 (>= 4.9)
- GCC OpenMP (GOMP) support library
-
- dep: libhat-trie0
- HAT-trie, an extremely efficient (space and time) modern variant of tries
-
- dep: libjemalloc1 (>= 2.1.1)
- general-purpose scalable concurrent malloc(3) implementation
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- dep: libnlopt0 (>= 2.2.4)
- nonlinear optimization library
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- dep: libssw0
- fast SIMD parallelized implementation of the Smith-Waterman algorithm
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- dep: libstdc++6 (>= 6)
- GNU Standard C++ Library v3
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- dep: python
- interactive high-level object-oriented language (default version)
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- dep: python-joblib
- tools to provide lightweight pipelining in Python
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- dep: python-yaml
- YAML parser and emitter for Python
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- dep: samtools
- processing sequence alignments in SAM and BAM formats
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- dep: zlib1g (>= 1:1.2.3.3)
- compression library - runtime
Hämta spades
| Arkitektur | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|
| amd64 | 3.673,8 kbyte | 17287 kbyte | [filförteckning] |