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[ 源代码: spades  ]

软件包: spades (3.11.1+dfsg-1)

spades 的相关链接

spades

Trisquel 的资源:

下载源码包 spades:

维护者:

Original Maintainers:

  • Debian Med Packaging Team (Mail Archive)
  • Andreas Tille
  • Afif Elghraoui
  • Sascha Steinbiss
  • Michael R. Crusoe

外部的资源:

相似软件包:

genome assembler for single-cell and isolates data sets

The SPAdes – St. Petersburg genome assembler is intended for both standard isolates and single-cell MDA bacteria assemblies. It works with Illumina or IonTorrent reads and is capable of providing hybrid assemblies using PacBio and Sanger reads. You can also provide additional contigs that will be used as long reads.

其他与 spades 有关的软件包

  • 依赖
  • 推荐
  • 建议
  • dep: bamtools
    toolkit for manipulating BAM (genome alignment) files
  • dep: bwa
    Burrows-Wheeler Aligner
  • dep: libc6 (>= 2.15)
    GNU C Library: Shared libraries
    同时作为一个虚包由这些包填实: libc6-udeb
  • dep: libgcc1 (>= 1:4.0)
    GCC support library
  • dep: libgomp1 (>= 4.9)
    GCC OpenMP (GOMP) support library
  • dep: libhat-trie0
    HAT-trie, an extremely efficient (space and time) modern variant of tries
  • dep: libjemalloc1 (>= 2.1.1)
    general-purpose scalable concurrent malloc(3) implementation
  • dep: libnlopt0 (>= 2.2.4)
    nonlinear optimization library
  • dep: libssw0
    fast SIMD parallelized implementation of the Smith-Waterman algorithm
  • dep: libstdc++6 (>= 6)
    GNU Standard C++ Library v3
  • dep: python
    interactive high-level object-oriented language (default version)
  • dep: python-joblib
    tools to provide lightweight pipelining in Python
  • dep: python-yaml
    YAML parser and emitter for Python
  • dep: samtools
    processing sequence alignments in SAM and BAM formats
  • dep: zlib1g (>= 1:1.2.3.3)
    compression library - runtime

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硬件架构 软件包大小 安装后大小 文件
amd64 3,673.8 kB17287 kB [文件列表]